Downloads

File Description Link
DPCfam full seeds DPCfam MC's seed sequence regions (SSRs) - based on the UniRef50 database (v. 2017_07)
DPCfam cdhit-0.60 seeds DPCfam MC's SSRs filtered at 60 P.Id. by CD-HIT - based on the UniRef50 database (v. 2017_07).
DPCfam MSA Multiple sequence alignment of each MC using DPCfam cdhit-060 seeds as input.
DPCfam HMM profiles HMM-profiles for all MCs
DPCfam-B MSA Multiple sequence alignment of each MC using DPCfam-B cdhit-060 seeds as input
DPCfam-B HMM profiles HMM-profiles for DPCfam-B MCs
Table 1: DPCfam full output and post processed files.